plot infections in all countries

all_countries.py

@@ -0,0 +1,31 @@
+"""
+Plot overview plot for each country separately
+"""
+import matplotlib.pyplot as pp
+import numpy as np
+basename="all_"
+
+def plot(data, countries):
+    figsize = (10,5)
+    for loc in data:
+        name = basename+loc
+        time, new_cases, new_deaths, total_cases, total_deaths = data[loc]
+        
+        fig, ax1 = pp.subplots(num=name, figsize=figsize)
+
+        ax1.plot(time, new_cases, label="raw new cases", color="grey", linestyle="-")
+        ax1.plot(time[3:-3], np.convolve(new_cases, np.ones((7,))/7, mode="valid"), label="new cases 7day mean", color="orange", linestyle="-", linewidth=2)
+
+        ax2 = ax1.twinx()
+        ax2.plot(time, total_cases, label=f"Total cases", marker="", linestyle="--", color="blue")
+
+        #ax1.xticks(rotation=45)
+        #ax1.set_xlabel("date")
+        ax1.set_ylabel("new cases")
+        ax2.set_ylabel("total cases")
+        fig.legend(frameon=False, loc="upper left", bbox_to_anchor=(0,1), bbox_transform=ax1.transAxes)
+        pp.title(loc)
+        fig.tight_layout()
+
+        pp.savefig("ac_"+name+".png")
+        pp.close(fig)